Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SSA_1664 | SSA_1665 | Phosphatidylethanolamine N-methyltransferase, putative; GC: 45.48%; Codon Adaptation Index (CAI): 0.758; Protein involved in transferase activity and S-adenosylmethionine-dependent methyltransferase activity. | Hypothetical protein; GC: 38.64%; Codon Adaptation Index (CAI): 0.781. | 0.671 |
SSA_1664 | SSA_1666 | Phosphatidylethanolamine N-methyltransferase, putative; GC: 45.48%; Codon Adaptation Index (CAI): 0.758; Protein involved in transferase activity and S-adenosylmethionine-dependent methyltransferase activity. | Collagen-binding surface protein, putative; GC: 45.05%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. SignalP prediction: Yes (prob. 0.999). | 0.621 |
SSA_1665 | SSA_1664 | Hypothetical protein; GC: 38.64%; Codon Adaptation Index (CAI): 0.781. | Phosphatidylethanolamine N-methyltransferase, putative; GC: 45.48%; Codon Adaptation Index (CAI): 0.758; Protein involved in transferase activity and S-adenosylmethionine-dependent methyltransferase activity. | 0.671 |
SSA_1665 | SSA_1666 | Hypothetical protein; GC: 38.64%; Codon Adaptation Index (CAI): 0.781. | Collagen-binding surface protein, putative; GC: 45.05%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. SignalP prediction: Yes (prob. 0.999). | 0.714 |
SSA_1666 | SSA_1664 | Collagen-binding surface protein, putative; GC: 45.05%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. SignalP prediction: Yes (prob. 0.999). | Phosphatidylethanolamine N-methyltransferase, putative; GC: 45.48%; Codon Adaptation Index (CAI): 0.758; Protein involved in transferase activity and S-adenosylmethionine-dependent methyltransferase activity. | 0.621 |
SSA_1666 | SSA_1665 | Collagen-binding surface protein, putative; GC: 45.05%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. SignalP prediction: Yes (prob. 0.999). | Hypothetical protein; GC: 38.64%; Codon Adaptation Index (CAI): 0.781. | 0.714 |