STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1702Conserved hypothetical protein; GC: 32.7%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.779. SignalP prediction: Yes (prob. 0.577); Curator(s): J. Alves. (421 aa)    
Predicted Functional Partners:
lacR
Transcriptional repressor of sugar metabolism, GlpR/DeoR family, putative; GC: 44.58%; Codon Adaptation Index (CAI): 0.797. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in transferase activity, pentose-phosphate shunt, non-oxidative branch and regulation of transcription, DNA-dependent.
       0.483
metS
Methionyl-tRNA synthetase, putative; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.483
SSA_1700
Hypothetical protein; GC: 17.54%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves.
       0.480
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.