STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1707Conserved uncharacterized protein; GC: 43.15%; Codon Adaptation Index (CAI): 0.768; Protein involved in oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen. (128 aa)    
Predicted Functional Partners:
exoA
Exodeoxyribonuclease, putative; GC: 45.2%; Codon Adaptation Index (CAI): 0.754; Protein involved in DNA repair.
  
    0.784
SSA_1704
Conserved uncharacterized protein; GC: 43.13%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.751. Possibly membrane-spanning protein. Curator(s): J. Alves.
       0.583
SSA_1705
Conserved hypothetical protein; GC: 40.79%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.791. SignalP prediction: Yes (prob. 0.473).
       0.583
birA
Biotin--[acetyl-CoA-carboxylase] ligase, putative; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.418
nrd
Nitroreductase, putative; GC: 42.76%; Codon Adaptation Index (CAI): 0.81; Protein involved in oxidoreductase activity.
   
    0.408
SSA_1804
NADPH-flavin oxidoreductase, putative; GC: 46.3%; Codon Adaptation Index (CAI): 0.769; Belongs to the flavin oxidoreductase frp family.
   
    0.408
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.