Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
csbDGeneral stress response protein CsbD, putative; GC: 39.49%; Codon Adaptation Index (CAI): 0.856. Curator(s): J. Alves; Belongs to the UPF0337 (CsbD) family. (64 aa)    
Predicted Functional Partners:
SSA_2149
Conserved hypothetical protein; GC: 36.94%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.721).
 
   
 0.750
SSA_1454
Conserved hypothetical protein; GC: 41.25%; Codon Adaptation Index (CAI): 0.771. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1).
  
     0.739
SSA_2062
Conserved hypothetical protein; GC: 46.32%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.793.
 
    0.717
SSA_2150
Membrane protein, putative; GC: 40.83%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.827.
 
    0.692
UbiA
4-hydroxybenzoate octaprenyltransferase, putative; GC: 44.44%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.789.
  
     0.635
SSA_2134
Conserved hypothetical protein; GC: 32.04%; Codon Adaptation Index (CAI): 0.749; Protein involved in FMN binding.
  
     0.590
SSA_1016
Phosphoenolpyruvate synthase, putative; GC: 48.35%; Codon Adaptation Index (CAI): 0.78; Protein involved in transferase activity, transferring phosphorus-containing groups.
  
     0.584
SSA_0247
Conserved hypothetical protein; GC: 39.81%; Codon Adaptation Index (CAI): 0.769. Curator(s): P. Manque, J. Alves; possible lipase class 3.
  
    0.571
SSA_1746
Conserved hypothetical protein; GC: 45.72%; Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves.
       0.531
SSA_1747
Conserved hypothetical protein; GC: 41.33%; Codon Adaptation Index (CAI): 0.782.
       0.527
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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