Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_1815Conserved hypothetical protein; GC: 32.15%; Codon Adaptation Index (CAI): 0.765. (309 aa)    
Predicted Functional Partners:
SSA_1814
Conserved hypothetical protein; GC: 32.6%; Codon Adaptation Index (CAI): 0.756.
       0.814
SSA_1813
Hypothetical protein; GC: 30.65%; Codon Adaptation Index (CAI): 0.735.
       0.802
SSA_1816
Conserved hypothetical protein; GC: 34.25%; Codon Adaptation Index (CAI): 0.751.
       0.792
SSA_1817
Conserved uncharacterized protein; GC: 33.48%; Codon Adaptation Index (CAI): 0.75. Curator(s): J. Alves; Protein involved in endonuclease activity.
       0.792
SSA_1812
Modification methylase, putative; GC: 29.83%; Codon Adaptation Index (CAI): 0.737; Protein involved in transferase activity.
       0.669
SSA_1818
Very short patch repair endonuclease, putative; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.583
valS
Valyl-tRNA synthetase, putative; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.422
SSA_1820
Hypothetical protein; GC: 24.74%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.715.
       0.422
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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