Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SSA_1945Oligopeptide transport ATP-binding protein, putative; GC: 43.45%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.79; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily. (355 aa)    
Predicted Functional Partners:
SSA_1946
Oligopeptide transport system permease protein, putative; GC: 40.99%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.796.
 0.999
SSA_1947
Oligopeptide transport system permease protein, putative; GC: 41.42%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.816. SignalP prediction: Yes (prob. 0.769).
 
 0.999
SSA_1944
Oligopeptide transport ATP-binding protein, putative; GC: 40.78%; Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.796; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 
0.998
SSA_0502
Peptide ABC transporter, permease protein, putative; GC: 45.94%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.782. Curator(s): D. Akan.
 
 0.997
SSA_1948
Oligopeptide-binding lipoprotein precursor, putative; GC: 41.44%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.799. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Protein involved in transport.
 
 
 0.992
SSA_1949
AliA protein, putative; GC: 42.87%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Protein involved in transport.
 
 
 0.988
SSA_0498
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, putative; GC: 50%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.755. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): M. Chaplin, J. Alves.
 
 0.986
SSA_1950
ABC-type oligopeptide transport system, periplasmic component, putative; GC: 41.23%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport.
 
 
 0.986
aliB
ABC-type oligopeptide transport system, putative; GC: 43.07%; Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport.
 
 
 0.982
oppA
ABC-type oligopeptide transporter, periplasmic component, putative; GC: 45.24%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport.
 
 
 0.982
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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