STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1950ABC-type oligopeptide transport system, periplasmic component, putative; GC: 41.23%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport. (653 aa)    
Predicted Functional Partners:
SSA_1947
Oligopeptide transport system permease protein, putative; GC: 41.42%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.816. SignalP prediction: Yes (prob. 0.769).
 
 0.991
SSA_1944
Oligopeptide transport ATP-binding protein, putative; GC: 40.78%; Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.796; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.986
SSA_1945
Oligopeptide transport ATP-binding protein, putative; GC: 43.45%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.79; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 
 0.986
SSA_1946
Oligopeptide transport system permease protein, putative; GC: 40.99%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.796.
 
 
 0.984
SSA_1949
AliA protein, putative; GC: 42.87%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Protein involved in transport.
 
  
 
0.943
SSA_1948
Oligopeptide-binding lipoprotein precursor, putative; GC: 41.44%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.799. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Protein involved in transport.
 
  
0.927
oppA
ABC-type oligopeptide transporter, periplasmic component, putative; GC: 45.24%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport.
  
  
 
0.902
aliB
ABC-type oligopeptide transport system, putative; GC: 43.07%; Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in transport.
  
  
 
0.901
SSA_0500
Peptide ABC transporter, permease protein, putative; GC: 45.75%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.747. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): D. Akan.
 
 
 0.650
SSA_0497
Nickel ABC transporter, putative; GC: 49.4%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Chaplin.
 
 
 0.627
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.