STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aspAlkaline-shock protein, putative; GC: 39.34%; Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves. (121 aa)    
Predicted Functional Partners:
SSA_1978
Dihydroxyacetone kinase family protein (Dak2 domain), putative; GC: 46.31%; Codon Adaptation Index (CAI): 0.802. Curator(s): J. Alves; Protein involved in kinase activity and glycerol metabolism.
 
  
 0.996
rpmB
50S ribosomal protein L28, putative; GC: 39.68%; Codon Adaptation Index (CAI): 0.837; Belongs to the bacterial ribosomal protein bL28 family.
       0.701
SSA_1976
Conserved uncharacterized protein; GC: 40.72%; Codon Adaptation Index (CAI): 0.815. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.
       0.678
SSA_2035
Conserved uncharacterized protein; GC: 49.88%; Codon Adaptation Index (CAI): 0.786.
 
    0.678
SSA_1084
Conserved uncharacterized protein; GC: 43.82%; Codon Adaptation Index (CAI): 0.793.
 
    0.666
ylxM
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.624
SSA_0451
Conserved uncharacterized protein; GC: 44.87%; Codon Adaptation Index (CAI): 0.764. Curator(s): M. Chaplin.
  
   
 0.592
SSA_0682
Conserved uncharacterized protein; GC: 45.2%; Codon Adaptation Index (CAI): 0.786. Curator(s): P. Xu.
 
    0.591
SSA_1982
Transcriptional regulator, LytR/AlgR family, putative; GC: 41.39%; Codon Adaptation Index (CAI): 0.745. Curator(s): J. Alves.
       0.563
SSA_1029
Conserved hypothetical protein; GC: 43.53%; Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves; (DegV family).
 
    0.560
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.