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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1981Conserved hypothetical protein; GC: 41.63%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.702). (220 aa)    
Predicted Functional Partners:
SSA_1982
Transcriptional regulator, LytR/AlgR family, putative; GC: 41.39%; Codon Adaptation Index (CAI): 0.745. Curator(s): J. Alves.
 
    0.958
rpmB
50S ribosomal protein L28, putative; GC: 39.68%; Codon Adaptation Index (CAI): 0.837; Belongs to the bacterial ribosomal protein bL28 family.
       0.560
SSA_1526
Conserved hypothetical protein; GC: 42.38%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.817).
  
     0.544
SSA_1973
Histidine kinase, putative; GC: 42.78%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.764; Protein involved in protein dimerization activity.
  
    0.492
SSA_0216
Histidine kinase, putative; GC: 44.98%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. Curator(s): P. Manque; Protein involved in protein dimerization activity.
  
    0.490
SSA_1843
Histidine kinase, putative; GC: 43.04%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.767; Protein involved in protein dimerization activity.
  
    0.490
SSA_1984
Cell surface SD repeat antigen precursor, putative; GC: 44.95%; Codon Adaptation Index (CAI): 0.758. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves.
       0.459
pkn
Serine/threonine protein kinase, putative; GC: 45.95%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786; Protein involved in transferase activity.
  
    0.448
SSA_0182
Endoglucanase, putative; GC: 42.37%; Codon Adaptation Index (CAI): 0.795. Curator(s): M. Serrano; Protein involved in hydrolase activity, acting on glycosyl bonds and carbohydrate metabolism; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
  
     0.434
asp
Alkaline-shock protein, putative; GC: 39.34%; Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves.
  
    0.431
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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