STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1981Conserved hypothetical protein; GC: 41.63%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.702). (220 aa)    
Predicted Functional Partners:
SSA_1982
Transcriptional regulator, LytR/AlgR family, putative; GC: 41.39%; Codon Adaptation Index (CAI): 0.745. Curator(s): J. Alves.
 
    0.971
rpmB
50S ribosomal protein L28, putative; GC: 39.68%; Codon Adaptation Index (CAI): 0.837; Belongs to the bacterial ribosomal protein bL28 family.
       0.708
SSA_1978
Dihydroxyacetone kinase family protein (Dak2 domain), putative; GC: 46.31%; Codon Adaptation Index (CAI): 0.802. Curator(s): J. Alves; Protein involved in kinase activity and glycerol metabolism.
       0.557
asp
Alkaline-shock protein, putative; GC: 39.34%; Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves.
       0.557
SSA_1526
Conserved hypothetical protein; GC: 42.38%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.817).
  
     0.544
SSA_1762
Permease, putative; GC: 42.76%; Transporter classification TC:9.B.22.1.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.775. Curator(s): J. Alves.
      
 0.519
SSA_1984
Cell surface SD repeat antigen precursor, putative; GC: 44.95%; Codon Adaptation Index (CAI): 0.758. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves.
       0.459
SSA_0182
Endoglucanase, putative; GC: 42.37%; Codon Adaptation Index (CAI): 0.795. Curator(s): M. Serrano; Protein involved in hydrolase activity, acting on glycosyl bonds and carbohydrate metabolism; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
  
     0.434
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.