STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1987Conserved hypothetical protein; GC: 40.08%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.753. (261 aa)    
Predicted Functional Partners:
SSA_1988
ABC-type transport system (uncharacterized), permease component, putative; GC: 40.66%; Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.76. Curator(s): J. Alves.
 
  
 0.974
SSA_1989
ABC-type transport system (uncharacterized), ATPase component, putative; GC: 44.51%; Transporter classification TC:3.A.1.23.2. Codon Adaptation Index (CAI): 0.785. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
  
 0.973
SSA_1986
Acetyltransferase, GNAT family, putative; GC: 38.13%; Codon Adaptation Index (CAI): 0.777; Protein involved in N-acetyltransferase activity and transferase activity.
       0.772
SSA_1572
Conserved hypothetical protein; GC: 41.08%; Codon Adaptation Index (CAI): 0.754.
  
     0.495
SSA_1990
Zn-porter lipoprotein, putative; GC: 39.32%; Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.778. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves; Belongs to the bacterial solute-binding protein 9 family.
       0.435
phtA
Pneumococcal histidine triad protein A, putative; GC: 39.29%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.789. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.453).
       0.409
SSA_0324
Conserved uncharacterized protein; GC: 46.87%; Codon Adaptation Index (CAI): 0.852. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription, DNA-dependent.
  
     0.407
SSA_1554
Conserved hypothetical protein; GC: 43.47%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.779; Protein involved in protein biosynthesis.
  
     0.401
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.