STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1990Zn-porter lipoprotein, putative; GC: 39.32%; Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.778. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves; Belongs to the bacterial solute-binding protein 9 family. (305 aa)    
Predicted Functional Partners:
adcC
ABC transporter, Zn porter, putative; GC: 44.44%; Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.809. Curator(s): M. Serrano; Protein involved in nucleoside-triphosphatase activity and establishment of competence for transformation.
 
 
 0.996
adcA
Zn-binding lipoprotein, putative; GC: 43.58%; Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.806. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.998); Curator(s): M. Serrano; Protein involved in establishment of competence for transformation; Belongs to the bacterial solute-binding protein 9 family.
 
 
 
0.993
adcB
ABC transporter (permease), Zn porter, putative; GC: 45.23%; Transporter classification TC:3.A.1.15.3. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.727. Curator(s): M. Serrano; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
 
 0.986
adcR
Multiple antibiotic resistance operon transcriptional repressor (MarR), putative; GC: 41.44%; Codon Adaptation Index (CAI): 0.796. Helix-turn-helix prediction: LysRAraC. Curator(s): M. Serrano, J. Alves; Protein involved in regulation of transcription, DNA-dependent.
  
  
 0.908
SSA_1340
Zn/Mn ABC-type porter lipoprotein, putative; GC: 47.71%; Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Belongs to the bacterial solute-binding protein 9 family.
  
  
0.901
phtA
Pneumococcal histidine triad protein A, putative; GC: 39.29%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.789. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.453).
  
  
 0.892
ssaC
ABC-type Mn2+/Zn2+ transport systems, permease component, putative; GC: 46.88%; Transporter classification TC:3.A.1.15.2. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.729. Curator(s): P. Manque, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
 0.889
ssaA
ABC-type Mn/Zn transporter, ATP-ase component, putative; GC: 45.47%; Transporter classification TC:3.A.1.15.2. Codon Adaptation Index (CAI): 0.783. Curator(s): P. Manque, J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
  
 0.862
phpA
Pneumococcal histidine triad protein D precursor, putative; GC: 47.66%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.72); Helix-turn-helix prediction: AraC.
  
  
 0.509
rpsN
30S ribosomal protein S14, putative; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.500
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.