STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2014D-alanyl-D-alanine carboxypeptidase, putative; GC: 47.28%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Protein involved in dipeptidase activity, hydrolase activity and peptidase activity. (262 aa)    
Predicted Functional Partners:
SSA_1277
D-alanyl-D-alanine carboxypeptidase; GC: 42.91%; Codon Adaptation Index (CAI): 0.784. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in carboxypeptidase activity, peptidase activity and regulation of transcription.
  
  
 
0.928
pbp2b
Penicillin-binding protein 2B, putative; GC: 48.57%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.767. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.995); Curator(s): P. Xu; Protein involved in penicillin binding and cell wall biosynthesis (sensu Bacteria).
     
 0.910
pbp2a
Penicillin-binding protein 2A, putative; GC: 47.78%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.78; Protein involved in response to antibiotic.
     
 0.910
pbp3
Penicillin-binding protein 3, putative; GC: 45.63%; Codon Adaptation Index (CAI): 0.763. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Helix-turn-helix prediction: AraC; Protein involved in proteolysis; Belongs to the peptidase S11 family.
     
 0.904
pbpX
Penicillin-binding protein 2X, putative; GC: 45.35%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.924); Protein involved in cell division and cell wall biosynthesis (sensu Bacteria).
     
 0.901
mrcB
Membrane carboxypeptidase (penicillin-binding protein), putative; GC: 46.63%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.778. Curator(s): M. Serrano, J. Alves.
     
 0.900
pbp1A
Penicillin-binding protein 1A, putative; GC: 45.28%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.775. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.699); Protein involved in response to antibiotic.
     
 0.900
SSA_2015
Phosphoglycerate mutase, putative; GC: 49.36%; Codon Adaptation Index (CAI): 0.799. Curator(s): J. Alves; Protein involved in phosphoglycerate mutase activity.
       0.778
SSA_2339
Microcin C7 resistance protein, putative; GC: 48.64%; Codon Adaptation Index (CAI): 0.747. Helix-turn-helix prediction: AraC.
  
  
 0.591
SSA_2016
Phosphoglycerate mutase, putative; GC: 50.28%; Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves; Protein involved in phosphoglycerate mutase activity.
       0.539
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.