STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgaL-xylulose-5-phosphate 3-epimerase, putative; GC: 47.92%; Codon Adaptation Index (CAI): 0.785. (287 aa)    
Predicted Functional Partners:
sgh
Hexulose-6-phosphate synthase, putative; GC: 48.13%; Codon Adaptation Index (CAI): 0.804.
 
 
 0.998
araD
Carbohydrate isomerase, AraD/FucA family, putative; GC: 50.21%; Codon Adaptation Index (CAI): 0.779.
 
 0.996
SSA_2082
Carbohydrate kinase, FGGY family, putative; GC: 48.29%; Codon Adaptation Index (CAI): 0.75; Protein involved in transferase activity; Belongs to the FGGY kinase family.
 
 
 0.960
ptxA
Phosphotransferase system sugar-specific EII component, putative; GC: 47.5%; Transporter classification TC:4.A.7.1.1. Codon Adaptation Index (CAI): 0.771; Protein involved in phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
   
 0.952
ptxB
Phosphotransferase system sugar-specific EII component, putative; GC: 37.63%; Transporter classification TC:4.A.7.1.1. Codon Adaptation Index (CAI): 0.815; Protein involved in phosphoenolpyruvate-dependent sugar phosphotransferase system.
 
  
 0.938
sgaT
PTS system, membrane component, putative; GC: 45.75%; Transporter classification TC:4.A.7.1.1. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.767.
 
   
 0.928
SSA_2076
Conserved uncharacterized protein; GC: 45.7%; Codon Adaptation Index (CAI): 0.808.
 
   
 0.874
SSA_2086
Conserved hypothetical protein; GC: 46.61%; Codon Adaptation Index (CAI): 0.766.
 
     0.854
SSA_2087
Conserved uncharacterized protein; GC: 44.11%; Codon Adaptation Index (CAI): 0.734. Helix-turn-helix prediction: AraC.
 
     0.718
SSA_2078
Conserved hypothetical protein; GC: 47.53%; Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC; Protein involved in regulation of transcription, DNA-dependent.
 
     0.602
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.