STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2124Dehydrogenase, eukaryotic-like, putative; GC: 38.48%; Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves; Protein involved in oxidoreductase activity. (284 aa)    
Predicted Functional Partners:
rnmV
Small primase-like protein (Toprim domain), putative; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
     
 0.808
tatD
Conserved hypothetical protein; GC: 48.77%; Codon Adaptation Index (CAI): 0.756; Protein involved in hydrolase activity.
  
    0.800
ksgA
Dimethyladenosine transferase, putative; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
 
 0.780
fabD
Malonyl-CoA:ACP transacylase, putative; GC: 44.95%; Codon Adaptation Index (CAI): 0.784; Protein involved in transferase activity.
 
 
 0.627
SSA_2122
Conserved hypothetical protein; GC: 40.2%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.746.
       0.563
labT
Conserved hypothetical protein; GC: 39.69%; Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.766.
       0.526
SSA_1429
Conserved hypothetical protein; GC: 44.71%; Codon Adaptation Index (CAI): 0.763; Protein involved in oxidoreductase activity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.507
fabF
Beta-ketoacyl-ACP synthase II (3-oxoacyl-(Acyl-carrier-protein) synthase II), putative; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.491
ppiA
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.476
SSA_1325
Ketoacyl reductase hetN, putative; GC: 48.77%; Codon Adaptation Index (CAI): 0.722; Protein involved in oxidoreductase activity.
 
 
 0.468
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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