STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2131DNA-binding protein, putative; GC: 44.75%; Codon Adaptation Index (CAI): 0.737; Protein involved in DNA binding. (72 aa)    
Predicted Functional Partners:
SSA_2132
Ure cluster protein, putative; GC: 45.69%; Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.726. Helix-turn-helix prediction: AraC.
       0.855
SSA_2130
Hypothetical protein; GC: 44.86%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.782.
       0.852
SSA_2129
Arsenical resistance operon transcription repressor (ArsR), putative; GC: 40.15%; Codon Adaptation Index (CAI): 0.744. Curator(s): J. Alves.
       0.487
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.