STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmH50S ribosomal protein L34, putative; GC: 47.41%; Codon Adaptation Index (CAI): 0.849; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)    
Predicted Functional Partners:
rplU
50S ribosomal protein L21, putative; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.992
rpmB
50S ribosomal protein L28, putative; GC: 39.68%; Codon Adaptation Index (CAI): 0.837; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.992
rpsP
30S ribosomal protein S16, putative; GC: 39.93%; Codon Adaptation Index (CAI): 0.801; Protein involved in protein biosynthesis; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.983
rplM
50S ribosomal protein L13, putative; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.983
rpsN
30S ribosomal protein S14, putative; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.983
rpsL
30S ribosomal protein S12, putative; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.982
rpmF
50S ribosomal protein L32, putative; GC: 48.09%; Codon Adaptation Index (CAI): 0.761; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.982
rpmJ
50S ribosomal protein L36, putative; GC: 38.46%; Codon Adaptation Index (CAI): 0.838. Curator(s): M. Serrano; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.982
rpmD
50S ribosomal protein L30, putative; GC: 38.8%; Codon Adaptation Index (CAI): 0.819. Curator(s): M. Serrano.
   
 
 0.981
rpmI
50S ribosomal protein L35, putative; GC: 44.78%; Codon Adaptation Index (CAI): 0.823. SignalP prediction: Yes (prob. 0.488); Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.980
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.