Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SSA_2148GC: 38.07%; Codon Adaptation Index (CAI): 0.837. General stress protein, similar to alkaline shock protein. Curator(s): J. Alves. (196 aa)    
Predicted Functional Partners:
SSA_2149
Conserved hypothetical protein; GC: 36.94%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.721).
 
     0.948
SSA_2386
Conserved hypothetical protein; GC: 30.99%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.766. Curator(s): T. Kitten.
 
     0.940
SSA_2150
Membrane protein, putative; GC: 40.83%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.827.
 
  
 0.834
SSA_2147
Conserved uncharacterized protein; GC: 33.82%; Codon Adaptation Index (CAI): 0.884. Curator(s): J. Alves; Belongs to the UPF0337 (CsbD) family.
 
   
 0.695
SSA_2062
Conserved hypothetical protein; GC: 46.32%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.793.
 
  
 0.683
SSA_1978
Dihydroxyacetone kinase family protein (Dak2 domain), putative; GC: 46.31%; Codon Adaptation Index (CAI): 0.802. Curator(s): J. Alves; Protein involved in kinase activity and glycerol metabolism.
  
  
 0.433
iga
IgA-specific metalloendopeptidase; GC: 40.46%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in hydrolase activity.
  
     0.408
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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