STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2149Conserved hypothetical protein; GC: 36.94%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.721). (193 aa)    
Predicted Functional Partners:
SSA_2386
Conserved hypothetical protein; GC: 30.99%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.766. Curator(s): T. Kitten.
 
   
 0.969
SSA_2148
GC: 38.07%; Codon Adaptation Index (CAI): 0.837. General stress protein, similar to alkaline shock protein. Curator(s): J. Alves.
 
     0.948
SSA_2150
Membrane protein, putative; GC: 40.83%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.827.
 
     0.808
SSA_2147
Conserved uncharacterized protein; GC: 33.82%; Codon Adaptation Index (CAI): 0.884. Curator(s): J. Alves; Belongs to the UPF0337 (CsbD) family.
 
   
 0.798
csbD
General stress response protein CsbD, putative; GC: 39.49%; Codon Adaptation Index (CAI): 0.856. Curator(s): J. Alves; Belongs to the UPF0337 (CsbD) family.
 
   
 0.750
iga
IgA-specific metalloendopeptidase; GC: 40.46%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in hydrolase activity.
  
     0.725
SSA_1018
Zinc metalloprotease zmpC precursor, putative; GC: 45.25%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.781. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Protein involved in metal ion binding.
  
     0.696
SSA_2062
Conserved hypothetical protein; GC: 46.32%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.793.
 
     0.638
SSA_0722
Conserved hypothetical protein; GC: 42.29%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.777. Curator(s): X. Ge, J. Alves; possible membrane-associated peptidase; Protein involved in proteolysis.
  
     0.631
zmpB
Zinc metalloprotease zmpB precursor, putative; GC: 46.16%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.781. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Protein involved in metal ion binding.
  
     0.532
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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