STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2167ABC-type multidrug transporter, ATPase and permease components, putative; GC: 47.28%; Transporter classification TC:3.A.1.201.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.763. SignalP prediction: Yes (prob. 0.592); Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances. (575 aa)    
Predicted Functional Partners:
SSA_2166
ABC-type multidrug transporter, ATPase and permease components, putative; GC: 47.51%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.772. SignalP prediction: Yes (prob. 0.969); Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
 
0.988
SSA_1962
Amino acid ABC transporter, ATP-binding protein, putative; GC: 47.64%; Transporter classification TC:3.A.1.3.13. Codon Adaptation Index (CAI): 0.79; Protein involved in nucleoside-triphosphatase activity.
 
     
0.624
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+], putative; GC: 47.21%; Codon Adaptation Index (CAI): 0.774; Protein involved in NAD binding; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.566
galU
Glucose-1-phosphate uridylyltransferase, putative; GC: 45.83%; Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.993); Helix-turn-helix prediction: AraC; Protein involved in nucleotidyltransferase activity.
  
  
 0.561
SSA_0462
ATP-binding cassette, subfamily B, bacterial; GC: 47.33%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.48); Curator(s): M. Chaplin, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
0.558
SSA_1374
Multidrug ABC transporter, ATPase and permease components, putative; GC: 47.27%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.984); Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
0.543
SSA_1109
ABC transporter ATP binding/permease protein, putative; GC: 44.29%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.802. SignalP prediction: Yes (prob. 0.483); Helix-turn-helix prediction: AraC; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
0.532
SSA_0928
ABC-type multidrug transporter, ATPase and permease components, putative; GC: 45.16%; Transporter classification TC:3.A.1.21.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.794. SignalP prediction: Yes (prob. 0.563); Curator(s): T. Kitten, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
0.516
SSA_1402
ABC-type multidrug transport system, ATPase and permease components, putative; GC: 45.8%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.98); Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
0.512
SSA_0929
ABC-type multidrug transporter, ATPase and permease components, putative; GC: 46.28%; Transporter classification TC:3.A.1.21.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.78. Curator(s): T. Kitten, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
0.509
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.