STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hipOAminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase, putative; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. (377 aa)    
Predicted Functional Partners:
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
 
  
 0.945
aspC
Aspartate aminotransferase, putative; GC: 47.06%; Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity.
 
  
 0.914
dapE
Succinyl-diaminopimelate desuccinylase; GC: 47.07%; Codon Adaptation Index (CAI): 0.792. Curator(s): D. Akan, J. Alves; Protein involved in protein dimerization activity.
    
 0.902
SSA_2171
Conserved hypothetical protein; GC: 44.88%; Codon Adaptation Index (CAI): 0.783; Protein involved in 5-formyltetrahydrofolate cyclo-ligase activity and metabolism; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.831
SSA_2170
Conserved hypothetical protein; GC: 41.37%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.774. SignalP prediction: Yes (prob. 0.942).
       0.826
livH
ABC transporter membrane-spanning permease-branched chain amino acid transport, putative; GC: 43.91%; Transporter classification TC:3.A.1.4.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.772; Belongs to the binding-protein-dependent transport system permease family.
      
 0.519
pepQ
Proline dipeptidase, putative; GC: 46.17%; Codon Adaptation Index (CAI): 0.806; Protein involved in metalloexopeptidase activity and dipeptidase activity.
     
 0.518
dapB
Dihydrodipicolinate reductase, putative; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
   
 0.483
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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