STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2196Conserved uncharacterized protein; GC: 44.03%; Codon Adaptation Index (CAI): 0.844. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves. (133 aa)    
Predicted Functional Partners:
SSA_2197
Conserved hypothetical protein; GC: 42.89%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.706. SignalP prediction: Yes (prob. 0.53).
 
     0.961
SSA_2198
Conserved hypothetical protein; GC: 47.31%; Codon Adaptation Index (CAI): 0.79.
       0.601
ctsR
Firmicutes transcriptional repressor of class III stress genes (CtsR), putative; GC: 44.73%; Codon Adaptation Index (CAI): 0.768. Curator(s): J. Alves; Protein involved in response to unfolded protein; Belongs to the CtsR family.
       0.525
nadR
ATPase/kinase, putative; GC: 45.33%; Codon Adaptation Index (CAI): 0.804. Possibly involved in NAD metabolism. Curator(s): J. Alves; Protein involved in nucleotidyltransferase activity and regulation of transcription.
       0.455
ppc
Phosphoenolpyruvate carboxylase, putative; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
       0.450
SSA_1525
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), putative; GC: 39.98%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Protein involved in cell wall catabolism.
       0.450
clpC
ATP-dependent Clp protease, ATP-binding subunit, putative; GC: 50.16%; Codon Adaptation Index (CAI): 0.776; Protein involved in protein metabolism; Belongs to the ClpA/ClpB family.
       0.428
SSA_2194
Nicotinamide mononucleotide transporter, putative; GC: 47.43%; Transporter classification TC:9.A.4.1.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.76. Curator(s): J. Alves.
       0.423
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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