Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_2197Conserved hypothetical protein; GC: 42.89%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.706. SignalP prediction: Yes (prob. 0.53). (156 aa)    
Predicted Functional Partners:
SSA_2196
Conserved uncharacterized protein; GC: 44.03%; Codon Adaptation Index (CAI): 0.844. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves.
 
     0.961
SSA_0603
Cobalt transporter, putative; GC: 47.55%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.736. Curator(s): D. Akan; Protein involved in cobalt ion transporter activity.
  
 
 0.693
ecfT
Cobalt transport protein cbiQ, putative; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.693
SSA_2198
Conserved hypothetical protein; GC: 47.31%; Codon Adaptation Index (CAI): 0.79.
       0.601
SSA_0497
Nickel ABC transporter, putative; GC: 49.4%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Chaplin.
  
 
 0.578
SSA_0500
Peptide ABC transporter, permease protein, putative; GC: 45.75%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.747. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): D. Akan.
  
 
 0.578
SSA_1947
Oligopeptide transport system permease protein, putative; GC: 41.42%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.816. SignalP prediction: Yes (prob. 0.769).
  
 
 0.578
SSA_1525
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), putative; GC: 39.98%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Protein involved in cell wall catabolism.
 
     0.570
SSA_0498
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, putative; GC: 50%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.755. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): M. Chaplin, J. Alves.
  
 
 0.558
SSA_0502
Peptide ABC transporter, permease protein, putative; GC: 45.94%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.782. Curator(s): D. Akan.
  
 
 0.558
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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