Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
licD1LPS biosynthesis protein, putative; GC: 40.15%; Codon Adaptation Index (CAI): 0.782; Protein involved in transferase activity. (307 aa)    
Predicted Functional Partners:
SSA_2213
Nucleotide sugar dehydratase, putative; GC: 43.19%; Codon Adaptation Index (CAI): 0.77; Protein involved in oxidoreductase activity.
 
     0.880
tarI
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2, putative; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
 
   
 0.873
SSA_2215
Oligosaccharide repeat unit polymerase Wzy, putative; GC: 37.18%; Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.517); Curator(s): T. Kitten.
 
     0.842
SSA_2217
Cps9H, putative; GC: 41.04%; Codon Adaptation Index (CAI): 0.772; Protein involved in transferase activity.
     
 0.783
SSA_2220
Galactosyltransferase, putative; GC: 41.42%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. SignalP prediction: Yes (prob. 0.989); Protein involved in transferase activity and transferase activity, transferring glycosyl groups.
     
 0.673
SSA_2212
Possible polysaccharide transport protein, putative; GC: 40.63%; Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.761.
     
 0.654
SSA_2219
UDP-glucose 4-epimerase, putative; GC: 41.35%; Codon Adaptation Index (CAI): 0.778; Protein involved in NAD binding.
 
     0.617
capD
Cps9E, putative; GC: 42.48%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.757; Protein involved in biosynthesis.
     
 0.595
SSA_2218
Glycosyltransferase (cell wall biogenesis) Cps9G, putative; GC: 41.88%; Transporter classification TC:9.B.32.1.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves; Protein involved in transferase activity and transferase activity, transferring glycosyl groups.
     
 0.590
SSA_2222
Tyrosine-protein kinase Wze, putative; GC: 45.06%; Transporter classification TC:8.A.3.2.2. Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves; Protein involved in capsule polysaccharide biosynthesis.
       0.582
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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