Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2219UDP-glucose 4-epimerase, putative; GC: 41.35%; Codon Adaptation Index (CAI): 0.778; Protein involved in NAD binding. (286 aa)    
Predicted Functional Partners:
SSA_2220
Galactosyltransferase, putative; GC: 41.42%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. SignalP prediction: Yes (prob. 0.989); Protein involved in transferase activity and transferase activity, transferring glycosyl groups.
  
 0.993
capD
Cps9E, putative; GC: 42.48%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.757; Protein involved in biosynthesis.
 
  
 0.941
SSA_2218
Glycosyltransferase (cell wall biogenesis) Cps9G, putative; GC: 41.88%; Transporter classification TC:9.B.32.1.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves; Protein involved in transferase activity and transferase activity, transferring glycosyl groups.
 
    0.798
SSA_2224
Phosphotyrosine-protein phosphatase, putative; GC: 44.81%; Codon Adaptation Index (CAI): 0.774; Protein involved in hydrolase activity.
 
    0.786
SSA_2222
Tyrosine-protein kinase Wze, putative; GC: 45.06%; Transporter classification TC:8.A.3.2.2. Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves; Protein involved in capsule polysaccharide biosynthesis.
 
  
 0.778
SSA_2223
Capsular polysaccharide biosynthesis protein Wzd (chain length regulator), putative; GC: 46.12%; Transporter classification TC:8.A.3.2.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. Curator(s): J. Alves.
 
    0.762
SSA_2213
Nucleotide sugar dehydratase, putative; GC: 43.19%; Codon Adaptation Index (CAI): 0.77; Protein involved in oxidoreductase activity.
 
     0.672
rpsS
30S ribosomal protein S19, putative; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.663
rplN
50S ribosomal protein L14, putative; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.638
cpsA
Transcriptional attenuator LytR, putative; GC: 43.61%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.774. SignalP prediction: Yes (prob. 0.997). Capsular polysaccharide biosynthesis transcriptional attenuator. Curator(s): J. Alves; Protein involved in DNA replication.
       0.629
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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