Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SSA_2240Holliday junction resolvase, putative; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (139 aa)    
Predicted Functional Partners:
SSA_2241
Conserved uncharacterized protein; GC: 41.95%; Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves; Protein involved in molecular function unknown; Belongs to the UPF0297 family.
 
    0.982
SSA_2239
Conserved uncharacterized cytosolic protein; GC: 41.67%; Codon Adaptation Index (CAI): 0.813; Belongs to the UPF0473 family.
  
    0.859
alaS
Alanyl-tRNA synthetase, putative; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.689
SSA_2243
Conserved uncharacterized protein; GC: 43.46%; Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.995).
       0.614
SpxA
Arsenate reductase, putative; GC: 38.6%; Codon Adaptation Index (CAI): 0.817; Protein involved in oxidoreductase activity; Belongs to the ArsC family.
  
    0.581
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase, putative; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.551
SSA_2231
Heme/copper-type cytochrome/quinol oxidases, subunit 1, putative; GC: 45.16%; Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.783.
       0.529
nrdD
Ribonucleotide reductase, class III, anaerobic, putative; GC: 48.63%; Codon Adaptation Index (CAI): 0.764; Protein involved in ribonucleoside-triphosphate reductase activity and metabolism.
       0.515
nrdG
Organic radical activating chaperone, putative; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.509
SSA_2235
Conserved uncharacterized protein; GC: 48.75%; Codon Adaptation Index (CAI): 0.798. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1).
       0.509
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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