STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2249ABC-type antimicrobial peptide transporter, ATPase component, putative; GC: 32.21%; Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.731. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity. (207 aa)    
Predicted Functional Partners:
SSA_2250
ABC-type antimicrobial peptide transporter, permease component, putative; GC: 31.27%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.732. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Curator(s): J. Alves.
    
  0.984
SSA_1530
ABC-type antimicrobial peptide transport system, permease component, putative; GC: 44.6%; Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.773. SignalP prediction: Yes (prob. 0.994); Curator(s): J. Alves.
   0.931
SSA_0895
ATP-binding cassette transporter-like protein, putative; GC: 45.32%; Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.46); Curator(s): L. Ozaki.
   0.907
SSA_2248
Conserved hypothetical protein; GC: 30.28%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.547).
       0.855
SSA_1588
Conserved ABC-type antimicrobial permease-like protein, putative; GC: 45.85%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.766. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.976); Curator(s): J. Alves.
  
 
 0.617
SSA_0924
ABC-type antimicrobial peptide transport system, permease component, putative; GC: 44.41%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.487); Curator(s): T. Kitten.
  
 
 0.577
SSA_0893
ATP-binding cassette transporter-like protein, putative; GC: 44.55%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.943); Curator(s): L. Ozaki.
 
 
 0.544
rpsE
30S ribosomal protein S5, putative; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
   
 0.474
acrA
Membrane-fusion protein / periplasmic component of efflux system, putative; GC: 44.76%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.471
SSA_1659
ABC-type antimicrobial peptide transport system, permease component, putative; GC: 36.85%; Transporter classification TC:3.A.1.123.4. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.98); Curator(s): J. Alves.
  
 
 0.440
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.