Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SSA_2252 | lytB | SSA_2252 | SSA_2301 | Conserved hypothetical protein; GC: 41.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. | S-layer protein/ peptidoglycan endo-beta-N-acetylglucosaminidase, putative; GC: 45%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Protein involved in peptidoglycan catabolism. | 0.432 |
| SSA_2252 | ruvA | SSA_2252 | SSA_2254 | Conserved hypothetical protein; GC: 41.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. | Holliday junction DNA helicase ruvA, putative; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.573 |
| SSA_2252 | tag | SSA_2252 | SSA_2253 | Conserved hypothetical protein; GC: 41.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. | GC: 40.54%; Codon Adaptation Index (CAI): 0.813; Protein involved in DNA-3-methyladenine glycosylase I activity. | 0.505 |
| lytB | SSA_2252 | SSA_2301 | SSA_2252 | S-layer protein/ peptidoglycan endo-beta-N-acetylglucosaminidase, putative; GC: 45%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Protein involved in peptidoglycan catabolism. | Conserved hypothetical protein; GC: 41.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. | 0.432 |
| ruvA | SSA_2252 | SSA_2254 | SSA_2252 | Holliday junction DNA helicase ruvA, putative; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | Conserved hypothetical protein; GC: 41.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. | 0.573 |
| ruvA | tag | SSA_2254 | SSA_2253 | Holliday junction DNA helicase ruvA, putative; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | GC: 40.54%; Codon Adaptation Index (CAI): 0.813; Protein involved in DNA-3-methyladenine glycosylase I activity. | 0.826 |
| tag | SSA_2252 | SSA_2253 | SSA_2252 | GC: 40.54%; Codon Adaptation Index (CAI): 0.813; Protein involved in DNA-3-methyladenine glycosylase I activity. | Conserved hypothetical protein; GC: 41.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. | 0.505 |
| tag | ruvA | SSA_2253 | SSA_2254 | GC: 40.54%; Codon Adaptation Index (CAI): 0.813; Protein involved in DNA-3-methyladenine glycosylase I activity. | Holliday junction DNA helicase ruvA, putative; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.826 |