STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cadXCadmium efflux system transcriptional regulator (ArsR-like), putative; GC: 32.45%; Codon Adaptation Index (CAI): 0.716. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in regulation of transcription, DNA-dependent. (112 aa)    
Predicted Functional Partners:
cadD2
Cadmium resistance transporter, putative; GC: 33.98%; Transporter classification TC:2.A.77.1.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.748. Curator(s): J. Alves.
  
  
 0.792
SSA_2290
Conserved hypothetical protein; GC: 31.52%; Codon Adaptation Index (CAI): 0.749; Protein involved in DNA binding.
       0.704
copA
P-type ATPase-metal/cation transport (probably copper), putative; GC: 37.4%; Transporter classification TC:3.A.3.5.1. Codon Adaptation Index (CAI): 0.768.
  
  
 0.481
ctpA
Copper-translocating P-type ATPase, putative; GC: 47.93%; Transporter classification TC:3.A.3.5.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.753. LipoP prediction: SpI. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano; Protein involved in metal ion transporter activity.
 
  
 0.423
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.