STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2292DNA segregation ATPase FtsK/SpoIIIE-like protein, putative; GC: 40.24%; Codon Adaptation Index (CAI): 0.745. Helix-turn-helix prediction: AraC. Curator(s): J. Alves. (366 aa)    
Predicted Functional Partners:
SSA_2293
Conserved hypothetical protein; GC: 37.95%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.711. SignalP prediction: Yes (prob. 0.497); Helix-turn-helix prediction: AraC.
       0.855
SSA_2283
Conserved uncharacterized protein; GC: 35.76%; Codon Adaptation Index (CAI): 0.829. Curator(s): J. Alves; Belongs to the WXG100 family.
  
 
 0.727
ukp
Ukp protein, putative; GC: 45.48%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791.
  
 
 0.722
SSA_2294
Conserved hypothetical protein; GC: 38.45%; Codon Adaptation Index (CAI): 0.745; Protein involved in DNA replication.
     
 0.688
divIB
Cell division protein DivIB, putative; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
   
 
 0.541
SSA_1003
ABC transporter substrate-binding protein-multiple sugars, putative; GC: 42.54%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.784. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Protein involved in transport.
  
     0.526
comEC
Competence protein, putative; GC: 43.24%; Transporter classification TC:3.A.11.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.763. Helix-turn-helix prediction: AraC. Curator(s): X. Ge, J. Alves; Protein involved in establishment of competence for transformation.
  
  
 0.474
polA
DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.460
SSA_2279
Conserved hypothetical protein; GC: 42.92%; Codon Adaptation Index (CAI): 0.815.
  
 
 0.437
SSA_0794
Zn-dependent protease, putative; GC: 47.22%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.542); Curator(s): X. Ge; Protein involved in hydrolase activity and proteolysis.
  
     0.414
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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