STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2298Serine protease containing a PDZ domain, putative; GC: 45.31%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves; Protein involved in protein binding. (344 aa)    
Predicted Functional Partners:
SSA_1550
Conserved hypothetical protein; GC: 45.21%; Codon Adaptation Index (CAI): 0.793; Protein involved in metal ion binding; Belongs to the SprT family.
 
     0.619
SSA_2299
Hypothetical protein; GC: 42.87%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.761.
       0.615
SSA_1720
Initiation-control protein, putative; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.558
SSA_2300
Hypothetical protein; GC: 38.25%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.758.
       0.502
SSA_2296
Transcriptional regulator, XRE family, putative; GC: 45.33%; Codon Adaptation Index (CAI): 0.783. Curator(s): J. Alves; Protein involved in DNA binding and regulation of transcription, DNA-dependent.
       0.447
SSA_2297
Membrane protein, putative; GC: 39.53%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.918).
       0.447
comEC
Competence protein, putative; GC: 43.24%; Transporter classification TC:3.A.11.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.763. Helix-turn-helix prediction: AraC. Curator(s): X. Ge, J. Alves; Protein involved in establishment of competence for transformation.
 
     0.438
SSA_0627
Conserved hypothetical protein; GC: 43.3%; Codon Adaptation Index (CAI): 0.821. Curator(s): P. Xu.
 
     0.433
SSA_1476
Phosphoglycerol transferase, alkaline phosphatase superfamily, putative; GC: 44.72%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.556); Protein involved in sulfuric ester hydrolase activity.
  
     0.413
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.