STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2309Fimbrial assembly protein, putative; GC: 44.23%; Codon Adaptation Index (CAI): 0.795; Protein involved in protein complex assembly and cell cycle. (470 aa)    
Predicted Functional Partners:
SSA_2308
Conserved hypothetical protein; GC: 41.75%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.573).
  
 
 0.985
SSA_2307
Hypothetical protein; GC: 45.49%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.552).
 
 
 0.955
norD
Nitric oxide reductase NorD / Von Willebrand factor type A (vWA) domain protein, putative; GC: 38.88%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves.
       0.682
SSA_2310
Hypothetical protein; GC: 39.52%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. SignalP prediction: Yes (prob. 0.969); Curator(s): J. Alves.
  
  
 0.663
SSA_2316
General secretory pathway protein F, putative; GC: 48.17%; Transporter classification TC:3.A.15.2.1. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.744.
 
 
 
 0.626
SSA_2318
PilB-like pili biogenesis ATPase, putative; GC: 45.45%; Transporter classification TC:3.A.15.2.1. Codon Adaptation Index (CAI): 0.755; Protein involved in nucleoside-triphosphatase activity.
 
 
 0.612
comEC
Competence protein, putative; GC: 43.24%; Transporter classification TC:3.A.11.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.763. Helix-turn-helix prediction: AraC. Curator(s): X. Ge, J. Alves; Protein involved in establishment of competence for transformation.
      
 0.598
SSA_2312
Hypothetical protein; GC: 43.76%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.751. SignalP prediction: Yes (prob. 1).
       0.557
SSA_2317
Tfp pilus assembly protein, pilus retraction ATPase PilT, putative; GC: 50.42%; Transporter classification TC:3.A.15.2.1. Codon Adaptation Index (CAI): 0.737; Protein involved in nucleoside-triphosphatase activity.
 
   
 0.537
comYB
Competence protein ComYB, putative; GC: 44.18%; Transporter classification TC:3.A.14.1.1. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.788. Curator(s): M. Serrano, J. Alves.
 
 
 
 0.506
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.