STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2345Conserved hypothetical protein; GC: 41.67%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.787. Helix-turn-helix prediction: AraC; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent. (167 aa)    
Predicted Functional Partners:
SSA_1030
Transcriptional regulator, TetR family, putative; GC: 38.54%; Codon Adaptation Index (CAI): 0.778. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in regulation of transcription.
  
     0.728
SSA_2343
Membrane protein, putative; GC: 44.27%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.755.
 
    0.555
pth
Peptidyl-tRNA hydrolase, putative; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.514
SSA_0324
Conserved uncharacterized protein; GC: 46.87%; Codon Adaptation Index (CAI): 0.852. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription, DNA-dependent.
  
     0.484
SSA_2344
Hypothetical protein; GC: 37.33%; Codon Adaptation Index (CAI): 0.751.
       0.429
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.