STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_2352ABC-type nitrate/sulfonate/bicarbonate transporter, periplasmic component, putative; GC: 42.81%; Codon Adaptation Index (CAI): 0.804. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves; Protein involved in heme binding. (333 aa)    
Predicted Functional Partners:
SSA_2351
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, putative; GC: 48.13%; Transporter classification TC:3.A.1.16.1. Codon Adaptation Index (CAI): 0.744. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
 0.999
SSA_2353
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, putative; GC: 46.75%; Transporter classification TC:3.A.1.17.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. Curator(s): J. Alves.
 
 0.999
rpsD
30S ribosomal protein S4, putative; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
       0.591
SSA_2106
Flavin monoxygenase, putative; GC: 53.43%; Codon Adaptation Index (CAI): 0.755. Curator(s): J. Alves.
  
  
 0.497
SSA_0474
Uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase, putative; GC: 50.07%; Codon Adaptation Index (CAI): 0.77. Curator(s): M. Chaplin; Protein involved in transferase activity.
  
  
 0.444
SSA_1125
NADPH-dependent FMN reductase, putative; GC: 40.92%; Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves.
  
  
 0.423
SSA_1386
NADPH-dependent FMN reductase, putative; GC: 47.18%; Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves.
  
  
 0.423
SSA_1346
Conserved hypothetical protein; GC: 40.28%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.781.
  
  
 0.400
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.