STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppc1Putative ABC-type oligopeptide transporter, permease subunit. (303 aa)    
Predicted Functional Partners:
oppf1
ATP binding protein, component of oligopeptide permease; Belongs to the ABC transporter superfamily.
 
 0.999
oppd1
Putative ABC-type oligopeptide transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.999
oppB
ABC-type oligopeptide transporter, permease subunit.
 
 0.999
oppa1
Putative periplasmic oligo/dipeptide-binding protein.
 
 0.997
oppd3
ABC-type oligopeptide transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.993
oppf3
Putative ATP binding protein, component of oligopeptide permease; Belongs to the ABC transporter superfamily.
  
 0.978
dppB
Dipeptide transport system permease, dppB.
  
 0.951
oppa3
Substrate binding proteins, component of oligopeptide permease, oppA.
 
 
 0.864
PNK_0299
Putative endopeptidase ykfC.
  
  
 0.542
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.498
Your Current Organism:
Protochlamydia naegleriophila
NCBI taxonomy Id: 389348
Other names: C. Protochlamydia naegleriophila, Candidatus Protochlamydia naegleriophila, strain KNic
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