STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNK_0331Conserved hypothetical protein. (325 aa)    
Predicted Functional Partners:
gspd3
Component D of type II secretion pathway; Belongs to the bacterial secretin family.
 
    0.910
PNK_0330
Conserved putative secreted protein.
 
     0.878
PNK_0008
Conserved hypothetical protein.
 
     0.768
mreC
Rod shape-determining protein MreC.
  
     0.767
wzc
Putative tyrosine-protein kinase.
 
     0.762
PNK_0088
Conserved putative secreted protein.
  
   0.758
gspd1
Putative general secretion pathway protein D; Belongs to the bacterial secretin family.
 
    0.746
PNK_0943
Conserved putative membrane protein.
  
    0.744
PNK_1732
Conserved putative secreted protein.
  
 
   0.742
PNK_0874
Hypothetical protein.
  
 
   0.729
Your Current Organism:
Protochlamydia naegleriophila
NCBI taxonomy Id: 389348
Other names: C. Protochlamydia naegleriophila, Candidatus Protochlamydia naegleriophila, strain KNic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.