STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNK_0336Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
sctV
Type III secretion pathway protein SctV.
    
   0.940
sctN
Type III secretion cytoplasmic ATPase SctN.
   
 
 0.848
PNK_0335
Conserved hypothetical protein.
       0.724
PNK_0338
Conserved hypothetical protein.
       0.571
sctQ
Putative type III secretion translocase SctQ.
       0.484
pkn
Serine/threonine protein kinase.
     
 0.460
sctE
Putative needle chaperone SctE.
     
 0.424
Your Current Organism:
Protochlamydia naegleriophila
NCBI taxonomy Id: 389348
Other names: C. Protochlamydia naegleriophila, Candidatus Protochlamydia naegleriophila, strain KNic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.