STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcHPutative Uncharacterized HTH-type transcriptional regulator ydcH. (159 aa)    
Predicted Functional Partners:
PNK_0501
Uncharacterized protein conserved in archaea; Belongs to the UPF0310 family.
 
    0.904
PNK_0502
Glyoxalase/Bleomycin resistance protein/Dioxygenase family protein.
 
   
 0.833
PNK_0727
Conserved hypothetical membrane protein.
  
  
 0.623
PNK_0729
Conserved hypothetical protein.
  
  
 0.614
PNK_2449
Putative transcriptional regulator, TetR family.
  
   
 0.523
aas
Acylglycerophosphoethanolamine acyltransferase.
  
  
 0.498
tag
DNA-3-methyladenine glycosylase I.
       0.488
PNK_0504
HD-domain containing protein.
       0.488
PNK_1080
Conserved hypothetical protein.
  
   
 0.477
PNK_0279
ABC-type transporter, permease subunit.
  
  
 0.466
Your Current Organism:
Protochlamydia naegleriophila
NCBI taxonomy Id: 389348
Other names: C. Protochlamydia naegleriophila, Candidatus Protochlamydia naegleriophila, strain KNic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.