Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PNK_0724 | PNK_0726 | PNK_0724 | PNK_0726 | Putative sensory histidine kinase. | Putative two-component response regulator. | 0.982 |
PNK_0724 | PNK_0727 | PNK_0724 | PNK_0727 | Putative sensory histidine kinase. | Conserved hypothetical membrane protein. | 0.978 |
PNK_0724 | PNK_0729 | PNK_0724 | PNK_0729 | Putative sensory histidine kinase. | Conserved hypothetical protein. | 0.987 |
PNK_0724 | PNK_0906 | PNK_0724 | PNK_0906 | Putative sensory histidine kinase. | Histidine kinase. | 0.732 |
PNK_0724 | PNK_1238 | PNK_0724 | PNK_1238 | Putative sensory histidine kinase. | Conserved hypothetical membrane protein. | 0.804 |
PNK_0724 | PNK_1537 | PNK_0724 | PNK_1537 | Putative sensory histidine kinase. | Chemotaxis protein. | 0.986 |
PNK_0724 | atoc3 | PNK_0724 | PNK_0904 | Putative sensory histidine kinase. | Sigma-54 dependent response regulator atoC. | 0.895 |
PNK_0724 | phoB | PNK_0724 | PNK_2225 | Putative sensory histidine kinase. | Two-component response regulator phoB. | 0.955 |
PNK_0724 | phoR | PNK_0724 | PNK_0119 | Putative sensory histidine kinase. | Two-component sensor histidine kinase phoR. | 0.751 |
PNK_0726 | PNK_0724 | PNK_0726 | PNK_0724 | Putative two-component response regulator. | Putative sensory histidine kinase. | 0.982 |
PNK_0726 | PNK_0727 | PNK_0726 | PNK_0727 | Putative two-component response regulator. | Conserved hypothetical membrane protein. | 0.999 |
PNK_0726 | PNK_0729 | PNK_0726 | PNK_0729 | Putative two-component response regulator. | Conserved hypothetical protein. | 0.991 |
PNK_0726 | PNK_0906 | PNK_0726 | PNK_0906 | Putative two-component response regulator. | Histidine kinase. | 0.695 |
PNK_0726 | PNK_1238 | PNK_0726 | PNK_1238 | Putative two-component response regulator. | Conserved hypothetical membrane protein. | 0.625 |
PNK_0726 | PNK_1537 | PNK_0726 | PNK_1537 | Putative two-component response regulator. | Chemotaxis protein. | 0.980 |
PNK_0726 | atoc3 | PNK_0726 | PNK_0904 | Putative two-component response regulator. | Sigma-54 dependent response regulator atoC. | 0.681 |
PNK_0726 | phoB | PNK_0726 | PNK_2225 | Putative two-component response regulator. | Two-component response regulator phoB. | 0.503 |
PNK_0726 | phoR | PNK_0726 | PNK_0119 | Putative two-component response regulator. | Two-component sensor histidine kinase phoR. | 0.831 |
PNK_0727 | PNK_0724 | PNK_0727 | PNK_0724 | Conserved hypothetical membrane protein. | Putative sensory histidine kinase. | 0.978 |
PNK_0727 | PNK_0726 | PNK_0727 | PNK_0726 | Conserved hypothetical membrane protein. | Putative two-component response regulator. | 0.999 |
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