Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PNK_0755 | PNK_1186 | PNK_0755 | PNK_1186 | Uncharacterized protein conserved in bacteria. | Conserved hypothetical membrane protein. | 0.476 |
PNK_0755 | PNK_2373 | PNK_0755 | PNK_2373 | Uncharacterized protein conserved in bacteria. | CAAX amino terminal protease family protein. | 0.405 |
PNK_1186 | PNK_0755 | PNK_1186 | PNK_0755 | Conserved hypothetical membrane protein. | Uncharacterized protein conserved in bacteria. | 0.476 |
PNK_1186 | PNK_1187 | PNK_1186 | PNK_1187 | Conserved hypothetical membrane protein. | Conserved hypothetical protein. | 0.480 |
PNK_1186 | PNK_2373 | PNK_1186 | PNK_2373 | Conserved hypothetical membrane protein. | CAAX amino terminal protease family protein. | 0.652 |
PNK_1186 | PNK_2384 | PNK_1186 | PNK_2384 | Conserved hypothetical membrane protein. | Hypothetical protein. | 0.492 |
PNK_1186 | gapA | PNK_1186 | PNK_1936 | Conserved hypothetical membrane protein. | glyceraldehyde-3-P dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.555 |
PNK_1186 | msrA | PNK_1186 | PNK_1072 | Conserved hypothetical membrane protein. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.443 |
PNK_1186 | rpsA | PNK_1186 | PNK_1361 | Conserved hypothetical membrane protein. | 30S ribosomal protein S1. | 0.547 |
PNK_1186 | zmaR | PNK_1186 | PNK_1036 | Conserved hypothetical membrane protein. | Uncharacterized N-acetyltransferase ydfB. | 0.553 |
PNK_1187 | PNK_1186 | PNK_1187 | PNK_1186 | Conserved hypothetical protein. | Conserved hypothetical membrane protein. | 0.480 |
PNK_2373 | PNK_0755 | PNK_2373 | PNK_0755 | CAAX amino terminal protease family protein. | Uncharacterized protein conserved in bacteria. | 0.405 |
PNK_2373 | PNK_1186 | PNK_2373 | PNK_1186 | CAAX amino terminal protease family protein. | Conserved hypothetical membrane protein. | 0.652 |
PNK_2373 | PNK_2384 | PNK_2373 | PNK_2384 | CAAX amino terminal protease family protein. | Hypothetical protein. | 0.749 |
PNK_2373 | zmaR | PNK_2373 | PNK_1036 | CAAX amino terminal protease family protein. | Uncharacterized N-acetyltransferase ydfB. | 0.751 |
PNK_2384 | PNK_1186 | PNK_2384 | PNK_1186 | Hypothetical protein. | Conserved hypothetical membrane protein. | 0.492 |
PNK_2384 | PNK_2373 | PNK_2384 | PNK_2373 | Hypothetical protein. | CAAX amino terminal protease family protein. | 0.749 |
PNK_2384 | zmaR | PNK_2384 | PNK_1036 | Hypothetical protein. | Uncharacterized N-acetyltransferase ydfB. | 0.734 |
gapA | PNK_1186 | PNK_1936 | PNK_1186 | glyceraldehyde-3-P dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Conserved hypothetical membrane protein. | 0.555 |
gapA | msrA | PNK_1936 | PNK_1072 | glyceraldehyde-3-P dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.547 |
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