Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rsbWAnti-sigma F factor. (135 aa)    
Predicted Functional Partners:
PNK_0630
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.954
PNK_0729
Conserved hypothetical protein.
  
  
 0.939
atoc3
Sigma-54 dependent response regulator atoC.
 
 
 0.939
PNK_2309
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.907
PNK_0563
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.840
PNK_1536
Hypothetical protein.
 
 
 0.773
pkn
Serine/threonine protein kinase.
 
 
 0.760
PNK_1982
LptE-family protein.
       0.712
PNK_0727
Conserved hypothetical membrane protein.
  
  
 0.700
PNK_0724
Putative sensory histidine kinase.
 
  
 0.696
Your Current Organism:
Protochlamydia naegleriophila
NCBI taxonomy Id: 389348
Other names: C. Protochlamydia naegleriophila, Candidatus Protochlamydia naegleriophila, strain KNic
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