STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA72255.1KEGG: pen:PSEEN1877 hypothetical protein. (122 aa)    
Predicted Functional Partners:
ACA72256.1
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1878 methyl-accepting chemotaxis transducer.
       0.585
ACA72257.1
PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1879 deoxyribonuclease, TatD family.
       0.479
ACA74520.1
PFAM: tail sheath protein; KEGG: pen:PSEEN4155 pyocin R2_PP, tail sheath protein gpFI.
  
    0.412
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.