STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA72448.1Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3049 transcriptional regulator PobR. (292 aa)    
Predicted Functional Partners:
ACA72449.1
4-hydroxybenzoate 3-monooxygenase; KEGG: pen:PSEEN3048 p-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3-monooxygenase); TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
 
  
 0.895
ACA71767.1
Transcriptional regulator, LysR family; TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1425 pca operon transcriptional activator PcaQ.
 
  
 0.835
ACA74029.1
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Taurine catabolism dioxygenase TauD/TfdA; phosphopantetheine-binding; KEGG: pfo:Pfl_1846 peptide synthase.
  
  
 0.826
ACA71520.1
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN1160 regulatory protein for pca operon (activator).
 
  
 0.783
ACA71285.1
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pen:PSEEN4784 protocatechuate 3,4-dioxygenase beta chain (3,4-PCD).
 
   
 0.602
ACA72447.1
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN2982 transcriptional regulator, MerR family.
  
 
 0.579
ACA72529.1
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2093 transcriptional regulator, LysR family.
 
  
 0.547
ACA72530.1
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: csa:Csal_0323 protocatechuate 4,5-dioxygenase.
 
  
 0.520
ACA71321.1
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN4613 transcriptional regulator, IclR family.
 
  
 0.519
ACA72542.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1994 transcriptional activator MltR.
 
   0.512
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.