STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA73462.1PFAM: Pirin domain protein; KEGG: pen:PSEEN3011 hypothetical protein; Belongs to the pirin family. (232 aa)    
Predicted Functional Partners:
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
   
  
 0.787
ACA73686.1
PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN2287 oxidoreductase, 2-nitropropane dioxygenase family.
      
 0.722
ACA71983.1
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pen:PSEEN1580 aromatic ring-opening dioxygenase.
 
  
 0.711
ACA73461.1
PFAM: UvrD/REP helicase; KEGG: pen:PSEEN3010 helicase; UvrD/REP family.
       0.504
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
     
 0.438
ACA73195.1
TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase.
     
 0.432
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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