STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA74617.1KEGG: pen:PSEEN1237 hypothetical protein. (68 aa)    
Predicted Functional Partners:
ACA74618.1
PFAM: HicB family protein; KEGG: pen:PSEEN1236 hypothetical protein.
 
   
 0.972
ACA74011.1
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bmu:Bmul_4193 transcriptional regulator, XRE family.
  
   
 0.847
ACA74334.1
PFAM: HicB family protein; KEGG: eba:ebA6033 conserved hypothetical protein, predicted HicB family potentially involved in pilus regulation.
 
   
 0.822
ACA74305.1
PFAM: protein of unknown function DUF497; KEGG: pen:PSEEN3950 hypothetical protein.
  
   
 0.692
ACA74899.1
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: psb:Psyr_0889 SpoVT/AbrB-like.
  
   
 0.685
ACA74012.1
KEGG: bbr:BB1411 hypothetical protein.
  
   
 0.548
ACA73135.1
PFAM: peptidase S14 ClpP; KEGG: pen:PSEEN3077 clp protease (protease subunit).
  
     0.541
ACA74898.1
Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; KEGG: psb:Psyr_0890 PemK-like protein.
  
   
 0.540
ACA74440.1
KEGG: mgm:Mmc1_2768 hypothetical protein.
  
     0.465
ACA71771.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1428 transcriptional regulator, Cro/CI family.
      
 0.457
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.