STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA75328.1TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN5134 TonB-dependent siderophore receptor. (810 aa)    
Predicted Functional Partners:
ACA75329.1
PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN5135 hypothetical protein.
 
  
 0.852
ACA75327.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN5132 FecR-like transmembrane sensor.
 
 
 0.842
ACA75326.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN5131 RNA polymerase sigma-70 factor, ECF subfamily.
 
  
 0.755
ACA73960.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pfl:PFL_2292 regulator for fec operon FecR.
 
 
 0.749
ACA72331.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pau:PA14_32720 probable transmembrane sensor.
 
 
 0.733
ACA75330.1
KEGG: pen:PSEEN5136 hypothetical protein.
       0.730
ACA74792.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor.
 
 
 0.725
selO
Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).
      
 0.724
ACA72576.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN2995 transmembrane sensor, FecR family.
 
 
 0.721
ACA74697.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN4421 FecR-like transmembrane sensor.
 
 
 0.717
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.