STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ81032.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
SEQ81104.1
Signal transduction histidine kinase.
       0.696
SEQ81073.1
Signal transduction histidine kinase.
       0.689
SEQ81150.1
MCP methyltransferase, CheR-type.
       0.660
SEQ81180.1
CheB methylesterase.
       0.660
SEQ81137.1
Response regulator receiver domain-containing protein.
       0.545
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.537
SEQ81213.1
Two-component system, cell cycle response regulator DivK.
       0.528
SER71062.1
Hypothetical protein.
  
     0.495
SEQ80940.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.493
SEQ80908.1
DinB superfamily protein.
       0.453
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.