Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER57503.1 | SER57525.1 | SAMN04488023_111108 | SAMN04488023_111109 | Rod shape-determining protein MreB. | Rod shape-determining protein MreC. | 0.987 |
SER57503.1 | SER57544.1 | SAMN04488023_111108 | SAMN04488023_111110 | Rod shape-determining protein MreB. | Hypothetical protein. | 0.706 |
SER57503.1 | SER57565.1 | SAMN04488023_111108 | SAMN04488023_111111 | Rod shape-determining protein MreB. | Penicillin-binding protein 2. | 0.952 |
SER57503.1 | SER57592.1 | SAMN04488023_111108 | SAMN04488023_111112 | Rod shape-determining protein MreB. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.940 |
SER57503.1 | SER75738.1 | SAMN04488023_111108 | SAMN04488023_115111 | Rod shape-determining protein MreB. | Penicillin-binding protein 1A. | 0.418 |
SER57503.1 | SES15279.1 | SAMN04488023_111108 | SAMN04488023_13620 | Rod shape-determining protein MreB. | Cell division protein FtsI (penicillin-binding protein 3). | 0.698 |
SER57503.1 | murA | SAMN04488023_111108 | SAMN04488023_11937 | Rod shape-determining protein MreB. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.689 |
SER57503.1 | murC | SAMN04488023_111108 | SAMN04488023_13626 | Rod shape-determining protein MreB. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.404 |
SER57503.1 | murF | SAMN04488023_111108 | SAMN04488023_10114 | Rod shape-determining protein MreB. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.402 |
SER57503.1 | murG | SAMN04488023_111108 | SAMN04488023_13625 | Rod shape-determining protein MreB. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.454 |
SER57525.1 | SER57503.1 | SAMN04488023_111109 | SAMN04488023_111108 | Rod shape-determining protein MreC. | Rod shape-determining protein MreB. | 0.987 |
SER57525.1 | SER57544.1 | SAMN04488023_111109 | SAMN04488023_111110 | Rod shape-determining protein MreC. | Hypothetical protein. | 0.869 |
SER57525.1 | SER57565.1 | SAMN04488023_111109 | SAMN04488023_111111 | Rod shape-determining protein MreC. | Penicillin-binding protein 2. | 0.965 |
SER57525.1 | SER57592.1 | SAMN04488023_111109 | SAMN04488023_111112 | Rod shape-determining protein MreC. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.908 |
SER57525.1 | SER75738.1 | SAMN04488023_111109 | SAMN04488023_115111 | Rod shape-determining protein MreC. | Penicillin-binding protein 1A. | 0.680 |
SER57525.1 | SES15279.1 | SAMN04488023_111109 | SAMN04488023_13620 | Rod shape-determining protein MreC. | Cell division protein FtsI (penicillin-binding protein 3). | 0.826 |
SER57525.1 | murF | SAMN04488023_111109 | SAMN04488023_10114 | Rod shape-determining protein MreC. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.440 |
SER57525.1 | murG | SAMN04488023_111109 | SAMN04488023_13625 | Rod shape-determining protein MreC. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.528 |
SER57544.1 | SER57503.1 | SAMN04488023_111110 | SAMN04488023_111108 | Hypothetical protein. | Rod shape-determining protein MreB. | 0.706 |
SER57544.1 | SER57525.1 | SAMN04488023_111110 | SAMN04488023_111109 | Hypothetical protein. | Rod shape-determining protein MreC. | 0.869 |
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