STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER82776.1Uncharacterized alpha/beta hydrolase domain. (471 aa)    
Predicted Functional Partners:
SER82842.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
     0.909
SER82800.1
Protein of unknown function.
       0.793
SER82752.1
Hypothetical protein.
       0.778
SER82822.1
Hypothetical protein.
       0.773
SER82732.1
Protein of unknown function.
     
 0.750
SER82711.1
OmpA family protein.
 
     0.740
SER82690.1
Hypothetical protein.
       0.687
SER97378.1
Hypothetical protein.
  
     0.648
SER97738.1
Hypothetical protein.
  
     0.633
SES08932.1
Hypothetical protein.
 
  
 0.632
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.