STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER93330.1CubicO group peptidase, beta-lactamase class C family. (409 aa)    
Predicted Functional Partners:
SER93304.1
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.678
SER93351.1
Uncharacterized protein YjlB.
       0.628
SER91869.1
Uncharacterized conserved protein YbbC, DUF1343 family.
    0.543
SEQ94220.1
Uncharacterized conserved protein YbbC, DUF1343 family.
    0.521
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.484
SES17261.1
Beta-glucosidase.
 
 
  0.445
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.