STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES12114.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
SES12054.1
Hypothetical protein.
   
   0.580
SES12093.1
Hypothetical protein.
       0.559
SES12076.1
Hypothetical protein.
       0.554
SER93943.1
Pectinesterase.
    
  0.428
SER94159.1
Lysophospholipase L1.
    
  0.428
Your Current Organism:
Pedobacter rhizosphaerae
NCBI taxonomy Id: 390241
Other names: DSM 18610, KACC 14938, NBRC 107690, P. rhizosphaerae, Pedobacter rhizosphaerae Kwon et al. 2011, strain 01-96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.